Open source tools, software and resources developed during my PhD.

🤖 Deep learning

• torchtime: benchmark time series data sets for PyTorch ⭐

💊 Electronic Health Record data

• ehr-codesets: code sets for EHR research
• ukbb-ehr-data: prepare UK Biobank EHR data
• ukbbhelpr: helper functions for UK Biobank data

🔧 Utilities

• docker-clear: clean up Docker development environments
• pypi-cookiecutter: cookiecutter template for PyPI packages
• simple-thesis: LaTeX template for PhD theses
• trailing-newline: pre-commit hook to flag missing trailing newlines